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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
224
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
129
histone modification
128
histone
76
broad histone mark
54
transcription factor
52
narrow histone mark
41
control
4
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
223
fastq
218
bam
214
bigWig
102
bed narrowPeak
89
tsv
59
tagAlign
58
bigBed narrowPeak
26
bed bed3+
26
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
325
Homo sapiens
Biosample type
332
tissue
111
in vitro differentiated cells
59
primary cell
3
stem cell
Organ
147
pancreas
102
liver
57
adipose tissue
57
connective tissue
26
musculature of body
Project
332
AMP
Genome assembly (visualization)
216
hg19
194
GRCh38
Lab
332
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
332 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
86
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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