Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
3
pCHi-C
Assay category
16
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2505
bam
2247
bigWig
1330
tsv
1214
bed narrowPeak
864
fastq
712
bigBed narrowPeak
245
bed broadPeak
228
bigBed broadPeak
225
bed bed3+
202
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
19
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
primary cell
2
cell line
Organ
4
pancreas
3
heart
2
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
19
AMP
Genome assembly (visualization)
17
hg19
Lab
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
19 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download