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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
142
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
83
October, 2019
43
November, 2017
28
June, 2019
16
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
174
bam
153
bigWig
136
bed narrowPeak
73
tagAlign
63
bigBed narrowPeak
37
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
9
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
206
Homo sapiens
Biosample type
195
tissue
11
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
150
GRCh38
129
hg19
Lab
206
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
bone marrow
vasculature
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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