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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
141
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
141
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
53
December, 2017
40
May, 2022
35
August, 2017
10
July, 2019
7
November, 2018
5
December, 2019
4
October, 2019
3
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
294
bam
269
bigWig
159
tsv
112
bed narrowPeak
81
fastq
62
tagAlign
51
bigBed narrowPeak
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
357
Homo sapiens
Biosample type
cell line
336
tissue
13
primary cell
8
in vitro differentiated cells
Organ
786
pancreas
640
connective tissue
471
adipose tissue
407
epithelium
357
liver
320
kidney
270
heart
216
brain
159
bone element
125
vasculature
119
blood vessel
88
limb
76
musculature of body
61
artery
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
357
AMP
Genome assembly (visualization)
274
hg19
242
GRCh38
Lab
317
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
biosample_type!
cell line
BIOSAMPLE
ASSAY
357 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
123
20
2
3
1
1
1
1
1
right lobe of liver
3
7
1
2
1
2
primary cell
hepatocyte
5
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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