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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
481
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
306
November, 2017
193
May, 2020
53
December, 2017
53
November, 2018
19
August, 2017
7
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
652
Homo sapiens
Biosample type
358
cell line
275
tissue
11
primary cell
8
in vitro differentiated cells
Organ
652
liver
619
pancreas
577
connective tissue
442
adipose tissue
273
epithelium
182
brain
174
heart
140
vasculature
135
blood vessel
129
kidney
88
artery
80
limb
66
bone element
60
blood
60
bodily fluid
49
musculature of body
32
embryo
26
nerve
20
spleen
18
ureter
11
vein
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
652
AMP
Genome assembly (visualization)
556
hg19
503
GRCh38
Lab
652
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
652 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
351
5
1
1
tissue
liver
112
147
2
1
right lobe of liver
7
2
1
1
2
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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