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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
20
ATAC-seq
17
ChIP-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
29
Transcription
20
DNA accessibility
17
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
broad histone mark
Date released
40
May, 2022
30
August, 2021
Available data
33
bed narrowPeak
33
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
70
Homo sapiens
Biosample type
40
tissue
30
cell line
Organ
221
pancreas
191
kidney
158
epithelium
70
liver
20
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
bone marrow
1
thymus
Project
70
AMP
Genome assembly (visualization)
34
hg19
Lab
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
cell line
HepG2
9
17
2
1
1
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