Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
402
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
251
November, 2017
171
May, 2020
53
November, 2018
40
December, 2017
40
May, 2022
28
August, 2021
24
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
579
bigWig
551
bam
412
bed narrowPeak
363
fastq
337
bigBed narrowPeak
174
tsv
55
bed broadPeak
55
bigBed broadPeak
40
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
641
Homo sapiens
Biosample type
332
cell line
290
tissue
12
primary cell
7
in vitro differentiated cells
Organ
815
pancreas
641
liver
605
connective tissue
450
epithelium
447
adipose tissue
327
kidney
316
heart
185
brain
169
vasculature
164
blood vessel
159
bone element
118
artery
71
limb
70
musculature of body
63
blood
63
bodily fluid
60
eye
26
embryo
20
lung
18
ureter
16
nerve
16
skeleton
13
spleen
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
641
AMP
Genome assembly (visualization)
581
hg19
502
GRCh38
Lab
575
AMP-T2D consortium
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
641 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
309
14
1
1
2
2
2
1
tissue
liver
80
167
20
2
3
1
1
1
1
1
right lobe of liver
4
3
1
2
1
2
primary cell
hepatocyte
2
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
7
Download