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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
147
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
147
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
139
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
43
June, 2019
41
August, 2017
31
July, 2019
22
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
499
bam
485
bigWig
371
fastq
270
tsv
173
bed narrowPeak
153
zippedFastqFolder
78
bigBed narrowPeak
49
tagAlign
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
955
Homo sapiens
Biosample type
2380
tissue
955
primary cell
289
in vitro differentiated cells
282
cell line
9
stem cell
Organ
370
epithelium
319
pancreas
34
connective tissue
29
kidney
26
vasculature
21
blood vessel
18
brain
13
liver
13
vein
12
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
471
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
500
hg19
431
GRCh38
Lab
456
AMP-T2D consortium
324
Klaus Kaestner, Upenn
174
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
955 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
10
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
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