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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
22
snATAC-seq
Assay category
113
DNA accessibility
87
Transcription
41
DNA methylation
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
714
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
97
fastq
96
bam
92
bigWig
84
bed narrowPeak
26
tsv
14
bigBed narrowPeak
7
txt
1
bed bed3+
1
csv
Organism
273
Homo sapiens
Biosample type
207
primary cell
66
tissue
Organ
176
pancreas
141
epithelium
40
liver
2
musculature of body
Project
139
AMP
134
HPAP
Genome assembly (visualization)
111
hg19
72
GRCh38
Lab
134
Klaus Kaestner, Upenn
75
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
organ_slims!
brain
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
273 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
4
4
13
pancreatic acinar cell
7
2
8
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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