Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
2
Hi-C
Assay category
7
DNA accessibility
2
3D chromatin structure
Date released
4
February, 2021
3
February, 2023
1
July, 2019
1
October, 2019
Available data
3093
bam
2891
bigWig
1574
tsv
1560
bed narrowPeak
1281
fastq
884
bigBed narrowPeak
269
tagAlign
262
bed broadPeak
234
bigBed broadPeak
228
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
cell line
1
primary cell
Organ
5
connective tissue
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
brain
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
Download