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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
24
histone
24
histone modification
14
narrow histone mark
14
transcription factor
10
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
11
August, 2017
5
December, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
23
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
38
Homo sapiens
Biosample type
19
cell line
9
in vitro differentiated cells
6
tissue
4
primary cell
Organ
20
liver
9
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
38
AMP
Genome assembly (visualization)
38
hg19
35
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
46
inconsistent control read length
inconsistent control run_type
3
inconsistent assembly
organ_slims!
brain
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
19
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
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