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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
Assay category
11
DNA accessibility
Date released
9
February, 2023
2
February, 2021
Available data
3140
bam
2938
bigWig
1605
bed narrowPeak
1574
tsv
1328
fastq
906
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
11
Homo sapiens
Biosample type
5
in vitro differentiated cells
4
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
brain
1
liver
Project
11
AMP
Genome assembly (visualization)
11
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent replicate
organ_slims!
brain
audit.WARNING.category!
inconsistent control run_type
files.file_type!
tar
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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