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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
17
WGBS
11
ATAC-seq
Assay category
34
DNA methylation
11
DNA accessibility
Date released
21
July, 2019
9
February, 2023
7
November, 2018
6
August, 2017
2
February, 2021
Available data
3140
bam
2938
bigWig
1605
bed narrowPeak
1574
tsv
1328
fastq
906
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
45
Homo sapiens
Biosample type
28
tissue
10
primary cell
5
in vitro differentiated cells
2
cell line
Organ
9
connective tissue
8
heart
6
epithelium
6
pancreas
4
bone element
4
kidney
4
liver
4
musculature of body
4
skeleton
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
45
AMP
Genome assembly (visualization)
28
hg19
19
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
organ_slims!
brain
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
45 results
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Clear Filters
RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 14 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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