Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
238
ChIP-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
7
DNase-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
264
DNA accessibility
238
DNA binding
57
DNA methylation
7
3D chromatin structure
Target of assay
214
histone
214
histone modification
114
broad histone mark
100
narrow histone mark
21
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
550
bigWig
541
bam
399
fastq
267
tsv
241
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
55
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
1016
Homo sapiens
Biosample type
2374
tissue
1016
primary cell
654
cell line
394
in vitro differentiated cells
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
487
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
571
hg19
479
GRCh38
Lab
452
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
organ_slims!
brain
audit.WARNING.category!
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
1016 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 82 more…
See all biosamples
Download