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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
186
ChIP-seq
184
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
26
DNase-seq
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
337
Transcription
275
DNA accessibility
186
DNA binding
57
DNA methylation
7
3D chromatin structure
Target of assay
150
histone
150
histone modification
78
broad histone mark
72
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
50
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
413
bigWig
412
bam
400
fastq
200
bed narrowPeak
171
tsv
153
zippedFastqFolder
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
863
Homo sapiens
Biosample type
2441
tissue
863
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
538
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
427
hg19
342
GRCh38
Lab
503
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
brain
award.project!
T1D
BIOSAMPLE
ASSAY
863 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
12
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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