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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
41
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
41
DNA binding
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
157
June, 2019
41
August, 2017
8
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2567
bam
2385
bigWig
1455
tsv
1170
bed narrowPeak
910
fastq
560
bigBed narrowPeak
260
tagAlign
235
bed bed3+
216
bed broadPeak
188
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
10
bed bed3
8
csv
7
bed bedgraph
3
cool
2
ibed
1
bedpe
1
hdf5
1
tar
Organism
210
Homo sapiens
Biosample type
177
tissue
cell line
38
primary cell
1
in vitro differentiated cells
Organ
78
kidney
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
216
AMP
Genome assembly (visualization)
202
hg19
191
GRCh38
Lab
214
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent assembly
organ_slims!
brain
biosample_type!
cell line
BIOSAMPLE
ASSAY
216 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 29 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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