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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
231
total RNA-seq
27
ATAC-seq
3
DNase-seq
1
Hi-C
1
WGBS
Assay category
469
DNA binding
231
Transcription
30
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
346
transcription factor
112
histone
112
histone modification
88
recombinant protein
64
RNA binding protein
57
narrow histone mark
54
broad histone mark
31
chromatin remodeller
6
control
2
other context
2
other post-translational modification
Date released
217
November, 2017
114
February, 2021
89
May, 2021
57
November, 2018
49
August, 2017
41
December, 2017
38
August, 2021
31
February, 2018
27
December, 2018
24
October, 2019
20
January, 2019
18
November, 2019
7
March, 2020
Available data
731
bam
699
bigWig
488
bed narrowPeak
442
fastq
338
bigBed narrowPeak
231
tsv
46
bed broadPeak
46
bigBed broadPeak
32
tagAlign
24
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
732
Homo sapiens
Biosample type
tissue
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
282
liver
69
epithelium
65
heart
64
artery
64
blood vessel
64
vasculature
57
pancreas
54
blood
54
bodily fluid
54
connective tissue
29
embryo
12
kidney
Project
728
AMP
4
T1D
Genome assembly (visualization)
830
hg19
732
GRCh38
5
hg18
Lab
732
AMP-T2D consortium
Audit category:
156
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
41
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
organ_slims!
brain
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
732 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
+ See 7 more…
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
48
4
1
neural progenitor cell
13
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
13
4
+ See 24 more…
stem cell
hESC
3
See all biosamples
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