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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
47
total RNA-seq
27
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
100
DNA accessibility
47
Transcription
27
DNA binding
1
3D chromatin structure
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
359
May, 2021
315
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
50
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
24
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
117
bam
117
bigWig
46
tsv
28
fastq
27
bed narrowPeak
27
bigBed narrowPeak
Organism
176
Homo sapiens
Biosample type
tissue
147
primary cell
29
cell line
Organ
27
blood
27
bodily fluid
2
liver
Project
131
AMP
45
T1D
Genome assembly (visualization)
117
hg19
72
GRCh38
Lab
131
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
organ_slims!
brain
biosample_type!
tissue
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
GM12878
27
HepG2
1
1
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