Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
33
single cell RNA-seq
27
ChIP-seq
21
snATAC-seq
1
Hi-C
Assay category
60
DNA accessibility
41
DNA methylation
33
Transcription
27
DNA binding
1
3D chromatin structure
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
359
May, 2021
315
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
50
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
24
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
28
fastq
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
Organism
162
Homo sapiens
Biosample type
134
primary cell
tissue
28
cell line
Organ
80
epithelium
80
pancreas
27
blood
27
bodily fluid
1
liver
Project
134
HPAP
28
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
134
Klaus Kaestner, Upenn
28
AMP-T2D consortium
Audit category:
1
inconsistent control
organ_slims!
brain
biosample_type!
tissue
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
WGBS
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
GM12878
27
HepG2
1
Download