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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
11
ChIP-seq
8
ATAC-seq
1
RRBS
Assay category
57
Transcription
11
DNA binding
8
DNA accessibility
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
5
July, 2019
5
June, 2019
1
May, 2021
Available data
79
bam
67
bigWig
57
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
488
epithelium
439
pancreas
423
liver
116
connective tissue
95
vasculature
91
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
34
embryo
20
vein
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
77
AMP
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
brain
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ChIP-seq
ATAC-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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