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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
9
ChIP-seq
8
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
57
Transcription
11
DNA accessibility
9
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
6
June, 2019
5
July, 2019
1
May, 2021
Available data
77
bam
65
bigWig
57
tsv
16
bed narrowPeak
6
tagAlign
4
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
78
Homo sapiens
Biosample type
tissue
66
cell line
11
primary cell
1
in vitro differentiated cells
Organ
416
epithelium
397
liver
363
pancreas
92
connective tissue
86
vasculature
81
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
brain
7
vein
6
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
78
AMP
Genome assembly (visualization)
73
GRCh38
73
hg19
Lab
78
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
brain
biosample_type!
tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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