Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
417
transcription factor
386
histone
386
histone modification
198
broad histone mark
187
narrow histone mark
150
control
89
recombinant protein
83
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
77
bam
76
bed narrowPeak
76
bigWig
71
fastq
70
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
1
tar
Organism
83
Homo sapiens
Biosample type
65
cell line
tissue
11
in vitro differentiated cells
7
primary cell
Organ
56
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
83
AMP
Genome assembly (visualization)
75
hg19
70
GRCh38
Lab
77
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
brain
biosample_type!
tissue
BIOSAMPLE
ASSAY
83 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 1 more…
See all biosamples
Download