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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
247
total RNA-seq
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
270
DNA binding
83
DNA accessibility
57
DNA methylation
7
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
50
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
24
July, 2019
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
515
bigWig
508
bam
368
fastq
255
tsv
245
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
76
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
hdf5
1
tar
Organism
867
Homo sapiens
Biosample type
2216
tissue
867
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
275
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
387
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
523
hg19
473
GRCh38
Lab
352
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
brain
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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