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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
15
ChIP-seq
Assay category
23
DNA accessibility
15
DNA binding
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
19
June, 2019
14
August, 2017
4
October, 2019
1
November, 2020
Available data
593
bigWig
592
bam
400
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
38
Homo sapiens
Biosample type
149
tissue
59
cell line
38
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
38
AMP
Genome assembly (visualization)
34
GRCh38
31
hg19
Lab
38
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
38 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
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