Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
154
total RNA-seq
128
ATAC-seq
114
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
DNase-seq
4
RRBS
2
small RNA-seq
1
DNAme array
1
Hi-C
Assay category
270
Transcription
194
DNA accessibility
184
DNA binding
5
DNA methylation
1
3D chromatin structure
Target of assay
170
histone
170
histone modification
91
broad histone mark
79
narrow histone mark
10
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
32
June, 2019
30
August, 2017
15
July, 2018
13
July, 2019
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
371
bigWig
358
bam
184
bed narrowPeak
168
fastq
151
tsv
96
tagAlign
73
zippedFastqFolder
43
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
11
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
1
bed bed3
1
hic
Organism
671
Homo sapiens
Biosample type
2457
tissue
671
primary cell
583
cell line
370
in vitro differentiated cells
10
stem cell
Organ
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
294
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
390
hg19
303
GRCh38
Lab
259
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
brain
epithelium
BIOSAMPLE
ASSAY
671 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
small RNA-seq
DNAme array
Hi-C
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 65 more…
See all biosamples
Download