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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
698
ChIP-seq
256
ATAC-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
Transcription
698
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
138
June, 2019
135
October, 2019
95
February, 2021
87
May, 2019
80
April, 2019
80
February, 2023
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
29
March, 2020
27
July, 2019
24
November, 2018
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
792
bed narrowPeak
767
bam
662
bigWig
445
bigBed narrowPeak
262
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
120
tagAlign
85
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
4
bed bed3
1
bedpe
Organism
1297
Homo sapiens
Biosample type
1306
tissue
634
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1272
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
747
GRCh38
703
hg19
Lab
1103
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1306 results
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table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
67
1
7
4
3
1
4
1
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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