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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
698
ChIP-seq
256
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
698
DNA binding
438
DNA accessibility
186
Transcription
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
179
August, 2021
138
June, 2019
135
October, 2019
101
February, 2021
87
May, 2019
81
February, 2023
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2022
40
May, 2024
39
July, 2019
29
March, 2020
24
November, 2018
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
792
bed narrowPeak
779
bam
674
bigWig
445
bigBed narrowPeak
262
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
139
tsv
120
tagAlign
98
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1483
Homo sapiens
Biosample type
1492
tissue
820
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1402
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
759
GRCh38
715
hg19
Lab
1222
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1492 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
kidney
27
75
64
13
6
1
1
1
liver
145
20
1
2
3
1
1
1
1
islet of Langerhans
71
67
1
7
4
3
1
4
1
bone element
84
heart left ventricle
35
2
18
3
4
1
1
1
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