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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ATAC-seq
174
single cell RNA-seq
163
ChIP-seq
111
total RNA-seq
87
RNA microarray
22
pCHi-C
18
snATAC-seq
16
Hi-C
10
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
285
Transcription
202
DNA accessibility
163
DNA binding
20
DNA methylation
16
3D chromatin structure
Target of assay
141
histone
141
histone modification
72
broad histone mark
69
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
93
February, 2021
76
February, 2023
53
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
27
March, 2020
19
April, 2020
15
May, 2023
13
February, 2020
12
July, 2019
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
April, 2019
1
August, 2022
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
1568
bigWig
1053
tsv
790
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
800
Homo sapiens
Biosample type
802
tissue
451
primary cell
103
in vitro differentiated cells
75
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
73
liver
53
eye
49
connective tissue
48
adipose tissue
48
pancreas
46
blood vessel
46
vasculature
39
artery
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
736
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
154
GRCh38
102
hg19
Lab
502
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
9
audit script error
organ_slims!
brain
award.project!
T1D
files.file_type!
bam
BIOSAMPLE
ASSAY
802 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
18
41
19
4
1
3
1
4
bone element
84
liver
20
1
23
20
1
1
1
3
left cardiac atrium
18
40
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