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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1002
total RNA-seq
667
ChIP-seq
244
ATAC-seq
179
single cell RNA-seq
119
DNase-seq
87
RNA microarray
26
WGBS
21
pCHi-C
17
snATAC-seq
11
small RNA-seq
10
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1192
Transcription
667
DNA binding
383
DNA accessibility
32
DNA methylation
10
3D chromatin structure
Target of assay
417
histone modification
416
histone
217
broad histone mark
199
narrow histone mark
158
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
120
July, 2018
106
June, 2019
80
April, 2019
80
May, 2019
76
February, 2023
74
October, 2018
64
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
29
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
11
February, 2020
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1635
bam
1511
bigWig
1046
tsv
739
bed narrowPeak
407
bigBed narrowPeak
363
fastq
156
txt
145
bed bed3+
132
bed broadPeak
117
bigBed broadPeak
105
tagAlign
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2390
Homo sapiens
Biosample type
2399
tissue
849
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
475
pancreas
361
liver
313
heart
299
kidney
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2333
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1612
GRCh38
1549
hg19
Lab
2074
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
musculature of body
award.project!
T1D
BIOSAMPLE
ASSAY
2399 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
285
69
56
6
1
4
1
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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