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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1156
total RNA-seq
896
ChIP-seq
298
ATAC-seq
176
single cell RNA-seq
152
DNase-seq
87
RNA microarray
28
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
12
small RNA-seq
10
RRBS
4
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
Assay category
1344
Transcription
896
DNA binding
481
DNA accessibility
37
DNA methylation
20
3D chromatin structure
Target of assay
556
histone modification
555
histone
289
broad histone mark
265
narrow histone mark
199
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
271
August, 2021
193
May, 2020
172
May, 2021
164
October, 2019
138
June, 2019
120
July, 2018
110
February, 2023
91
December, 2017
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
47
September, 2023
46
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1972
bam
1829
bigWig
1184
tsv
924
bed narrowPeak
506
fastq
462
bigBed narrowPeak
203
bed bed3+
178
bed broadPeak
160
tagAlign
160
txt
150
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
9
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2897
Homo sapiens
Biosample type
2512
tissue
1067
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2809
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1921
GRCh38
1909
hg19
4
hg18
Lab
2500
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
203
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
28
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
2906 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
298
71
67
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 95 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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