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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1020
total RNA-seq
409
ChIP-seq
253
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1206
Transcription
409
DNA binding
282
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
220
histone modification
219
histone
162
control
132
narrow histone mark
87
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
229
August, 2021
193
May, 2020
120
July, 2018
109
October, 2019
94
February, 2023
66
May, 2022
65
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
29
October, 2018
19
April, 2020
19
May, 2019
16
April, 2019
15
May, 2023
13
February, 2020
12
December, 2017
9
November, 2018
8
January, 2021
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1681
bam
1570
bigWig
1053
tsv
792
bed narrowPeak
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2064
Homo sapiens
Biosample type
2067
tissue
969
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
212
kidney
158
bone element
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1970
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1216
GRCh38
1173
hg19
Lab
1715
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
organ_slims!
brain
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2067 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
71
67
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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