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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
993
total RNA-seq
561
ChIP-seq
239
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
19
pCHi-C
15
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
DNase-seq
Assay category
1185
Transcription
561
DNA binding
272
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
327
histone modification
326
histone
181
broad histone mark
145
narrow histone mark
142
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
229
August, 2021
193
May, 2020
October, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
19
April, 2020
17
November, 2018
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
October, 2017
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1578
bam
1486
bigWig
1046
tsv
716
bed narrowPeak
398
bigBed narrowPeak
365
fastq
174
bed bed3+
bed broadPeak
157
txt
145
bigBed broadPeak
109
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2180
Homo sapiens
Biosample type
2183
tissue
999
primary cell
574
cell line
385
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
484
adipose tissue
482
pancreas
352
liver
278
heart
227
kidney
158
bone element
brain
104
blood vessel
104
vasculature
45
artery
37
musculature of body
32
eye
24
spleen
21
limb
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2086
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1421
GRCh38
1361
hg19
Lab
1833
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
brain
files.file_type!
bed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
2183 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
278
44
53
6
7
3
1
4
1
1
adipose tissue
382
2
2
3
1
liver
166
140
20
1
3
1
1
1
1
kidney
49
23
75
64
6
1
1
1
bone element
84
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