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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
644
ChIP-seq
254
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
DNase-seq
Assay category
1206
Transcription
644
DNA binding
287
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
418
histone modification
417
histone
217
broad histone mark
200
narrow histone mark
162
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
256
August, 2017
229
August, 2021
193
May, 2020
152
October, 2019
120
July, 2018
94
February, 2023
83
May, 2019
76
April, 2019
66
July, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
35
May, 2024
19
April, 2020
17
November, 2018
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
October, 2017
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1658
bam
1543
bigWig
1053
tsv
766
bed narrowPeak
425
bigBed narrowPeak
350
fastq
bed broadPeak
176
bed bed3+
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2304
Homo sapiens
Biosample type
2307
tissue
1024
primary cell
542
cell line
382
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
477
pancreas
356
liver
276
heart
230
kidney
brain
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2210
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1473
GRCh38
1420
hg19
Lab
1962
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
brain
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2307 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
63
65
6
7
4
3
1
4
1
1
adipose tissue
382
2
3
3
1
liver
167
144
20
1
3
1
1
1
1
kidney
49
26
75
64
6
1
1
1
bone element
84
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