Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
965
total RNA-seq
698
ChIP-seq
181
ATAC-seq
169
single cell RNA-seq
151
DNase-seq
87
RNA microarray
23
pCHi-C
22
snATAC-seq
15
Hi-C
12
small RNA-seq
11
WGBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
RRBS
Assay category
1146
Transcription
698
DNA binding
357
DNA accessibility
15
3D chromatin structure
13
DNA methylation
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
101
August, 2021
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
May, 2022
53
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
19
April, 2020
18
November, 2018
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1681
bam
1570
bigWig
1053
tsv
728
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
120
tagAlign
100
txt
24
bed bedMethyl
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
4
bed bed3
1
bedpe
Organism
2337
Homo sapiens
Biosample type
2346
tissue
1058
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
360
liver
306
heart
brain
158
bone element
156
kidney
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2249
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1603
hg19
1565
GRCh38
Lab
2136
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
files.file_type!
bigBed bedMethyl
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
2346 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
WGBS
MeRIP-seq
FAIRE-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
292
71
67
6
1
4
7
3
4
1
adipose tissue
382
2
3
1
1
liver
167
145
20
1
2
1
1
1
3
kidney
27
53
13
1
bone element
84
+ See 94 more…
See all biosamples
Download