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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ChIP-seq
150
DNase-seq
3
ATAC-seq
3
FAIRE-seq
Assay category
289
DNA binding
156
DNA accessibility
Target of assay
224
histone
224
histone modification
146
broad histone mark
78
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
138
June, 2019
68
May, 2019
64
April, 2019
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
15
November, 2018
6
January, 2019
3
December, 2018
1
July, 2019
Available data
1681
bam
1570
bigWig
1053
tsv
792
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
439
Homo sapiens
Biosample type
445
tissue
355
cell line
98
primary cell
17
in vitro differentiated cells
Organ
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
445
AMP
Genome assembly (visualization)
440
GRCh38
439
hg19
Lab
445
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
445 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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