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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
894
total RNA-seq
698
ChIP-seq
256
ATAC-seq
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
906
Transcription
698
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
193
May, 2020
156
October, 2019
138
June, 2019
123
August, 2021
July, 2018
93
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
65
May, 2022
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
13
February, 2020
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1559
bam
1448
bigWig
828
tsv
792
bed narrowPeak
445
bigBed narrowPeak
357
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
144
txt
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
4
bed bed3
1
bedpe
Organism
2203
Homo sapiens
Biosample type
2212
tissue
883
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
379
pancreas
360
liver
brain
235
kidney
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2171
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1534
GRCh38
1490
hg19
Lab
1927
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
month_released!
July, 2018
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
2212 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
islet of Langerhans
172
71
67
1
7
4
3
1
4
1
kidney
49
27
75
13
6
1
1
1
bone element
84
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