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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
968
total RNA-seq
625
ChIP-seq
218
ATAC-seq
174
single cell RNA-seq
146
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
21
pCHi-C
15
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1154
Transcription
625
DNA binding
395
DNA accessibility
35
DNA methylation
15
3D chromatin structure
Target of assay
390
histone modification
389
histone
197
broad histone mark
192
narrow histone mark
146
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
193
May, 2020
135
June, 2019
130
October, 2019
120
July, 2018
80
April, 2019
74
October, 2018
66
May, 2022
59
February, 2023
59
July, 2019
48
December, 2017
47
September, 2023
May, 2021
40
May, 2024
40
November, 2019
37
May, 2019
35
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
10
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1556
bam
1462
bigWig
1001
tsv
692
bed narrowPeak
383
bigBed narrowPeak
365
fastq
173
bed bed3+
172
bed broadPeak
157
txt
144
bigBed broadPeak
120
tagAlign
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2330
Homo sapiens
Biosample type
2339
tissue
834
primary cell
575
cell line
262
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
468
pancreas
361
liver
311
heart
299
kidney
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2243
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1513
GRCh38
1504
hg19
Lab
1989
AMP-T2D consortium
142
Katalin Susztak, Upenn
50
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
vasculature
month_released!
May, 2021
BIOSAMPLE
ASSAY
2339 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
256
71
67
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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