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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
624
ChIP-seq
256
ATAC-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
Transcription
624
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
414
histone modification
413
histone
214
broad histone mark
199
narrow histone mark
133
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
138
June, 2019
135
October, 2019
95
February, 2021
87
May, 2019
80
April, 2019
80
February, 2023
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
29
March, 2020
27
July, 2019
24
November, 2018
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
747
bed narrowPeak
693
bam
617
bigWig
400
bigBed narrowPeak
204
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
120
tagAlign
85
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
4
bed bed3
1
bedpe
Organism
1223
Homo sapiens
Biosample type
1232
tissue
634
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
brain
204
heart
187
liver
184
kidney
163
pancreas
120
blood vessel
120
vasculature
115
limb
96
bone element
75
musculature of body
69
artery
67
connective tissue
66
adipose tissue
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1198
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
702
GRCh38
658
hg19
Lab
1029
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
month_released!
October, 2018
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1232 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
67
1
7
4
3
1
4
1
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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