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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
624
ChIP-seq
ATAC-seq
180
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1206
Transcription
624
DNA binding
182
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
414
histone modification
413
histone
214
broad histone mark
199
narrow histone mark
133
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
193
May, 2020
165
August, 2021
141
October, 2019
138
June, 2019
120
July, 2018
87
May, 2019
80
April, 2019
October, 2018
61
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
36
March, 2020
28
May, 2022
24
November, 2018
20
November, 2019
19
April, 2020
16
February, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1545
bam
1484
bigWig
1052
tsv
539
bed narrowPeak
397
bigBed narrowPeak
279
fastq
178
bed bed3+
175
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2173
Homo sapiens
Biosample type
2182
tissue
865
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
518
connective tissue
459
adipose tissue
392
pancreas
340
liver
274
heart
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2096
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1455
GRCh38
1446
hg19
Lab
1959
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
month_released!
October, 2018
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
2182 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
1
liver
167
145
1
2
3
1
1
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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