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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
108
total RNA-seq
22
ATAC-seq
9
WGBS
5
RRBS
2
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
176
DNA binding
108
Transcription
25
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
209
bam
197
bigWig
175
fastq
108
tsv
86
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
317
Homo sapiens
Biosample type
324
tissue
73
in vitro differentiated cells
59
primary cell
16
cell line
Organ
186
pancreas
58
adipose tissue
58
connective tissue
54
liver
26
musculature of body
Project
324
AMP
Genome assembly (visualization)
220
hg19
197
GRCh38
Lab
324
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
324 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
Hi-C
tissue
islet of Langerhans
42
108
19
1
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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