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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
623
total RNA-seq
585
ChIP-seq
250
ATAC-seq
174
single cell RNA-seq
149
DNase-seq
86
RNA microarray
28
snATAC-seq
22
pCHi-C
21
WGBS
16
Hi-C
10
RRBS
10
small RNA-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
807
Transcription
585
DNA binding
430
DNA accessibility
31
DNA methylation
16
3D chromatin structure
Target of assay
377
histone modification
376
histone
193
broad histone mark
183
narrow histone mark
138
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
227
August, 2017
193
May, 2020
159
February, 2021
155
October, 2019
137
June, 2019
120
July, 2018
93
February, 2023
87
May, 2019
80
April, 2019
66
May, 2022
56
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
November, 2019
37
March, 2020
23
November, 2018
19
April, 2020
14
May, 2023
11
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1241
bam
1107
bigWig
739
bed narrowPeak
654
tsv
435
bigBed narrowPeak
322
fastq
174
bed broadPeak
172
bed bed3+
157
txt
147
bigBed broadPeak
112
tagAlign
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1976
Homo sapiens
Biosample type
1984
tissue
1065
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
361
liver
299
kidney
273
heart
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1887
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1194
GRCh38
1188
hg19
Lab
1672
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
adipose tissue
BIOSAMPLE
ASSAY
1984 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
298
71
67
1
7
4
3
1
4
1
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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