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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
952
total RNA-seq
698
ChIP-seq
244
ATAC-seq
180
single cell RNA-seq
151
DNase-seq
28
snATAC-seq
27
WGBS
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1144
Transcription
698
DNA binding
426
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
152
October, 2019
138
June, 2019
120
July, 2018
87
May, 2019
86
February, 2023
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
24
November, 2018
20
March, 2020
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1615
bam
1512
bigWig
977
tsv
784
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
120
tagAlign
69
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2322
Homo sapiens
Biosample type
2331
tissue
1050
primary cell
656
cell line
389
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
504
pancreas
487
adipose tissue
360
liver
310
heart
299
kidney
brain
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2235
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1590
GRCh38
1542
hg19
Lab
1980
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
2
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
bone element
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
2331 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
67
6
1
7
3
1
4
1
adipose tissue
382
2
3
3
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
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