Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1020
total RNA-seq
256
ATAC-seq
250
ChIP-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1206
Transcription
438
DNA accessibility
250
DNA binding
37
DNA methylation
16
3D chromatin structure
Target of assay
409
histone modification
histone
213
broad histone mark
195
narrow histone mark
162
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
161
August, 2017
138
June, 2019
120
July, 2018
94
February, 2023
66
July, 2019
66
May, 2022
65
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
36
March, 2020
24
November, 2018
23
May, 2019
20
April, 2019
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1379
bam
1207
bigWig
1053
tsv
432
bed narrowPeak
299
fastq
221
bigBed narrowPeak
166
bed bed3+
157
txt
151
bed broadPeak
149
bigBed broadPeak
64
xls
33
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2061
Homo sapiens
Biosample type
2064
tissue
833
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1969
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1323
GRCh38
1289
hg19
Lab
1752
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
organ_slims!
brain
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2064 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
298
67
20
1
7
4
3
1
4
1
adipose tissue
382
3
1
3
1
liver
167
20
81
1
2
3
1
1
1
1
kidney
49
75
7
64
13
6
1
1
1
bone element
84
+ See 85 more…
See all biosamples
Download