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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
Hi-C
1
snATAC-seq
Assay category
5
DNA accessibility
2
Transcription
1
3D chromatin structure
Date released
4
February, 2023
2
August, 2021
2
February, 2021
2
May, 2021
1
July, 2019
1
May, 2022
Available data
405
bam
401
fastq
231
bigWig
186
tsv
183
bed narrowPeak
161
txt
153
zippedFastqFolder
116
tagAlign
43
bigBed narrowPeak
39
bed broadPeak
23
bedpe bed3+
hic
18
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
12
bed bed3+
9
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
12
Homo sapiens
Biosample type
6
in vitro differentiated cells
4
primary cell
1
cell line
1
tissue
Organ
8
connective tissue
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
12
AMP
Genome assembly (visualization)
GRCh38
225
hg19
Lab
8
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
brain
assembly!
GRCh38
files.file_type!
hic
BIOSAMPLE
ASSAY
12 results
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Clear Filters
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
Hi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
endothelial cell of hepatic sinusoid
1
osteoblast
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
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