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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
34
ChIP-seq
2
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
173
DNA accessibility
34
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
157
June, 2019
26
August, 2017
8
October, 2019
7
November, 2018
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
July, 2019
1
May, 2022
1
November, 2020
Available data
2858
bam
2648
bigWig
1443
tsv
1442
bed narrowPeak
1196
fastq
898
bigBed narrowPeak
274
bed broadPeak
246
bigBed broadPeak
240
tagAlign
213
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
213
Homo sapiens
Biosample type
178
tissue
29
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
brain
34
musculature of body
30
heart
29
pancreas
21
epithelium
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
213
AMP
Genome assembly (visualization)
207
GRCh38
200
hg19
Lab
211
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
213 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 29 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 14 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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