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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
20
ChIP-seq
2
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
173
DNA accessibility
20
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
4
control
3
transcription factor
1
RNA binding protein
Date released
157
June, 2019
12
August, 2017
8
October, 2019
7
November, 2018
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
July, 2019
1
May, 2022
1
November, 2020
Available data
2779
bam
2610
bigWig
1443
tsv
1437
bed narrowPeak
1117
fastq
886
bigBed narrowPeak
274
bed broadPeak
246
bigBed broadPeak
240
tagAlign
199
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
199
Homo sapiens
Biosample type
164
tissue
29
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
brain
34
musculature of body
30
heart
21
epithelium
19
pancreas
18
ureter
13
liver
13
vasculature
11
blood vessel
10
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
199
AMP
Genome assembly (visualization)
193
GRCh38
186
hg19
Lab
197
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
biosample_type!
in vitro differentiated cells
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
199 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
islet of Langerhans
11
+ See 28 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 14 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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