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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
ATAC-seq
2
Capture-C
1
DNase-seq
Assay category
33
DNA binding
7
DNA accessibility
Target of assay
20
histone
20
histone modification
11
broad histone mark
9
narrow histone mark
8
transcription factor
5
control
2
RNA binding protein
1
chromatin remodeller
Date released
26
December, 2017
8
August, 2017
4
February, 2023
2
August, 2021
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
474
tissue
357
cell line
105
primary cell
42
in vitro differentiated cells
3
stem cell
Organ
16
connective tissue
14
epithelium
14
liver
3
embryo
Project
42
AMP
Genome assembly (visualization)
42
hg19
34
GRCh38
Lab
40
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
8
inconsistent control read length
organ_slims!
brain
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
in vitro differentiated cells
hepatocyte
14
adipocyte
7
3
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
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