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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
4
ATAC-seq
1
snATAC-seq
Assay category
177
DNA accessibility
53
DNA binding
5
3D chromatin structure
2
Transcription
Date released
157
June, 2019
7
November, 2018
7
October, 2019
4
February, 2023
1
May, 2022
1
November, 2020
Available data
459
bed narrowPeak
354
bam
315
bigWig
208
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
99
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
0
cool
Organism
177
Homo sapiens
Biosample type
150
tissue
22
primary cell
4
in vitro differentiated cells
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
brain
30
heart
18
ureter
16
epithelium
12
connective tissue
11
vasculature
9
blood vessel
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
177
AMP
Genome assembly (visualization)
172
GRCh38
164
hg19
Lab
177
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
177 results
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DNase-seq
ATAC-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 27 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 12 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
Panc1
1
See all biosamples
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