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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
DNase-seq
1
Hi-C
Assay category
85
DNA accessibility
1
3D chromatin structure
Date released
81
June, 2019
4
October, 2019
1
July, 2019
Available data
319
bam
308
bed narrowPeak
275
bigWig
179
bigBed narrowPeak
92
tsv
87
bed broadPeak
87
bigBed broadPeak
86
bed bed3+
64
xls
62
txt
6
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
csv
4
hic
2
bedpe bed3+
1
hdf5
1
tar
Organism
86
Homo sapiens
Biosample type
73
tissue
13
primary cell
Organ
78
kidney
36
limb
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
86
AMP
Genome assembly (visualization)
85
GRCh38
79
hg19
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
86 results
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DNase-seq
Hi-C
tissue
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
+ See 5 more…
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