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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
208
ATAC-seq
150
DNase-seq
3
FAIRE-seq
Assay category
391
DNA binding
361
DNA accessibility
Target of assay
321
histone modification
320
histone
172
broad histone mark
148
narrow histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
138
June, 2019
76
October, 2019
68
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
45
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
15
November, 2018
8
February, 2021
6
January, 2019
6
July, 2019
6
October, 2017
3
December, 2018
2
March, 2020
Available data
1681
bam
1530
bigWig
1053
tsv
752
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
746
Homo sapiens
Biosample type
752
tissue
404
cell line
284
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
brain
153
kidney
133
heart
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
750
AMP
2
T1D
Genome assembly (visualization)
653
GRCh38
647
hg19
Lab
650
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
752 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
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